49 lines
1.5 KiB
Ruby
49 lines
1.5 KiB
Ruby
class RaxmlNg < Formula
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desc "RAxML Next Generation: faster, easier-to-use and more flexible"
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homepage "https://sco.h-its.org/exelixis/web/software/raxml/"
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url "https://github.com/amkozlov/raxml-ng.git",
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tag: "1.0.2",
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revision: "411611611793e53c992717d869ca64370f2e4789"
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license "AGPL-3.0-or-later"
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bottle do
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sha256 cellar: :any, big_sur: "549ebe02f250cc28377df782326ba655b058bb942b1ebd8837557df1540c2fff"
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sha256 cellar: :any, catalina: "1cda64ccb9691d92434d397017a762910352c9cbac678efa1d92228b449a0d67"
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sha256 cellar: :any, mojave: "906ac3867d84dbbddeac1f2b670fd0ce3abc6534af8969fb58a3ec13950691e7"
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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depends_on "cmake" => :build
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depends_on "libtool" => :build
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depends_on "gmp"
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depends_on "open-mpi"
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uses_from_macos "bison" => :build
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uses_from_macos "flex" => :build
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resource "example" do
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url "https://sco.h-its.org/exelixis/resource/download/hands-on/dna.phy"
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sha256 "c2adc42823313831b97af76b3b1503b84573f10d9d0d563be5815cde0effe0c2"
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end
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def install
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args = std_cmake_args + ["-DUSE_GMP=ON"]
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mkdir "build" do
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system "cmake", "..", *args
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system "make", "install"
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end
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mkdir "build_mpi" do
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ENV["CC"] = "mpicc"
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ENV["CXX"] = "mpicxx"
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system "cmake", "..", *args, "-DUSE_MPI=ON", "-DRAXML_BINARY_NAME=raxml-ng-mpi"
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system "make", "install"
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end
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end
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test do
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testpath.install resource("example")
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system "#{bin}/raxml-ng", "--msa", "dna.phy", "--start", "--model", "GTR"
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end
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end
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