33 lines
1.1 KiB
Ruby
33 lines
1.1 KiB
Ruby
class Bedtools < Formula
|
|
desc "Tools for genome arithmetic (set theory on the genome)"
|
|
homepage "https://github.com/arq5x/bedtools2"
|
|
url "https://github.com/arq5x/bedtools2/archive/v2.30.0.tar.gz"
|
|
sha256 "c575861ec746322961cd15d8c0b532bb2a19333f1cf167bbff73230a7d67302f"
|
|
license "MIT"
|
|
|
|
bottle do
|
|
sha256 cellar: :any, arm64_big_sur: "d43458d5a8f50a7db0f7f728ed82c0a980d9202126624d594d17c99c2c9ea76d"
|
|
sha256 cellar: :any, big_sur: "6554348743d3efba64e47294f8cb229229f168902234dd7e0ee0b4dfa85bb4d7"
|
|
sha256 cellar: :any, catalina: "32d302a56df9044ce36d44db851318fc4fb45676086e48a6d913f2286ae3a756"
|
|
sha256 cellar: :any, mojave: "69b80814d21b11edf9d45d67de8536d5db965dd6743e56079e1f3d6cf77bb6d2"
|
|
end
|
|
|
|
depends_on "python@3.9" => :build
|
|
depends_on "xz"
|
|
|
|
uses_from_macos "bzip2"
|
|
uses_from_macos "zlib"
|
|
|
|
def install
|
|
inreplace "Makefile", "python", "python3"
|
|
|
|
system "make"
|
|
system "make", "install", "prefix=#{prefix}"
|
|
end
|
|
|
|
test do
|
|
(testpath/"t.bed").write "c\t1\t5\nc\t4\t9"
|
|
assert_equal "c\t1\t9", shell_output("#{bin}/bedtools merge -i t.bed").chomp
|
|
end
|
|
end
|