55 lines
1.9 KiB
Ruby
55 lines
1.9 KiB
Ruby
class Beagle < Formula
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desc "Evaluate the likelihood of sequence evolution on trees"
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homepage "https://github.com/beagle-dev/beagle-lib"
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url "https://github.com/beagle-dev/beagle-lib/archive/v3.1.2.tar.gz"
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sha256 "dd872b484a3a9f0bce369465e60ccf4e4c0cd7bd5ce41499415366019f236275"
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license "LGPL-3.0"
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revision 1
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livecheck do
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url :stable
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regex(/^v?(\d+(?:\.\d+)+)$/i)
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end
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bottle do
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sha256 cellar: :any, big_sur: "1ad3ce2956827daace31c7d2606c8149afdcf305f8e3688c8cfe5b0da429d3ad"
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sha256 cellar: :any, catalina: "de8fe667e01d1e204c669980753cf9ef84b4d2406ab52c0882d6d9108d2dc7eb"
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sha256 cellar: :any, mojave: "fe9ae7aaa01df98d34b5cbd7dce8abd9ac840f2bb54797851b42a056ee258e01"
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sha256 cellar: :any, high_sierra: "d2a42acc06fa4bf26c25b4d63a96c0d6bf46f7b1a21bacf91ef70fbff58e77b4"
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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depends_on "doxygen" => :build
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depends_on "libtool" => :build
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depends_on "openjdk" => [:build, :test]
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def install
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system "./autogen.sh"
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system "./configure", "--disable-dependency-tracking",
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"--disable-silent-rules",
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"--prefix=#{prefix}",
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"--without-cuda",
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"--disable-libtool-dev"
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system "make", "install"
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end
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test do
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(testpath/"test.cpp").write <<~EOS
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#include "libhmsbeagle/platform.h"
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int main() { return 0; }
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EOS
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(testpath/"T.java").write <<~EOS
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class T {
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static { System.loadLibrary("hmsbeagle-jni"); }
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public static void main(String[] args) {}
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}
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EOS
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system ENV.cxx, "-I#{include}/libhmsbeagle-1",
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testpath/"test.cpp", "-o", "test"
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system "./test"
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system "#{Formula["openjdk"].bin}/javac", "T.java"
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system "#{Formula["openjdk"].bin}/java", "-Djava.library.path=#{lib}", "T"
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end
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end
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