40 lines
1.9 KiB
Ruby
40 lines
1.9 KiB
Ruby
class Vsearch < Formula
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desc "Versatile open-source tool for microbiome analysis"
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homepage "https://github.com/torognes/vsearch"
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url "https://github.com/torognes/vsearch/archive/v2.22.1.tar.gz"
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sha256 "c62bf69e7cc3d011a12e3b522ba8c0c91fb90deea782359e9569677d0c991778"
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license any_of: ["BSD-2-Clause", "GPL-3.0-or-later"]
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_ventura: "bda0ab83f9e19c237c07fd3f79c13cf2b57190baccb3b0f2a83e78dbe79e445a"
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sha256 cellar: :any_skip_relocation, arm64_monterey: "26458ebd854652a1a8ad1bc9a421ecbff3eb4d18bbfeb04bc563d7a3155fc60f"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "1ef50f6a561e90fa600581990f92a3b5f5eda98317efd98ad1686b780c9ba090"
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sha256 cellar: :any_skip_relocation, ventura: "40025c3e74d6749c5fd2726cf768e03a2429a2ecc10bbca1d7ba2ecdbb0d6f93"
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sha256 cellar: :any_skip_relocation, monterey: "9df313961a9e2cb3e85acb461084c9cfdf821f8cec37762b630607e9146c9b07"
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sha256 cellar: :any_skip_relocation, big_sur: "66713897d8f2429e1c1be48ee534fba592c667909110e4947fac259bdd575219"
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sha256 cellar: :any_skip_relocation, catalina: "4220e7dfa2cab712bc77941540850043c87286c8dd1cb8112beed5c69e4f5448"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "77032d2419ab4063cfcbfdb199b9bf0a54bc5b4087c77226c334817c12d98896"
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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def install
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system "./autogen.sh"
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system "./configure", "--disable-dependency-tracking",
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"--disable-silent-rules",
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"--prefix=#{prefix}"
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system "make"
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system "make", "install"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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system bin/"vsearch", "--rereplicate", "test.fasta", "--output", "output.txt"
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assert_predicate testpath/"output.txt", :exist?
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end
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end
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