33 lines
1.0 KiB
Ruby
33 lines
1.0 KiB
Ruby
require 'formula'
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class Cufflinks < Formula
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homepage 'http://cufflinks.cbcb.umd.edu/'
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url 'http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.0.2.tar.gz'
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sha1 '91954b4945c49ca133b39bffadf51bdf9ec2ff26'
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depends_on 'boost' => :build
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depends_on 'samtools' => :build
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depends_on 'eigen' => :build
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fails_with :clang do
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build 421
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end
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def install
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ENV['EIGEN_CPPFLAGS'] = '-I'+Formula.factory('eigen').include/'eigen3'
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ENV.append 'LDFLAGS', '-lboost_system-mt'
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cd 'src' do
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# Fixes 120 files redefining `foreach` that break building with boost
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# See http://seqanswers.com/forums/showthread.php?t=16637
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`for x in *.cpp *.h; do sed 's/foreach/for_each/' $x > x; mv x $x; done`
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inreplace 'common.h', 'for_each.hpp', 'foreach.hpp'
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end
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system "./configure", "--disable-debug", "--disable-dependency-tracking",
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"--prefix=#{prefix}",
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"--mandir=#{man}"
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system 'make'
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ENV.j1
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system 'make install'
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end
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end
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