32 lines
1.5 KiB
Ruby
32 lines
1.5 KiB
Ruby
class Bowtie2 < Formula
|
|
desc "Fast and sensitive gapped read aligner"
|
|
homepage "https://bowtie-bio.sourceforge.io/bowtie2/"
|
|
url "https://github.com/BenLangmead/bowtie2/archive/v2.4.5.tar.gz"
|
|
sha256 "db101391b54a5e0eeed7469b05aee55ee6299558b38607f592f6b35a7d41dcb6"
|
|
license "GPL-3.0-or-later"
|
|
|
|
bottle do
|
|
sha256 cellar: :any_skip_relocation, arm64_monterey: "ddb6c153e12bef52b933b8ec71b4d13b668575e48804687595435e216e7465d3"
|
|
sha256 cellar: :any_skip_relocation, arm64_big_sur: "5c0e1c79103307e874265d07ed9f2f611051fe7a3443bd860b4fcbb829b37601"
|
|
sha256 cellar: :any_skip_relocation, monterey: "1890493587a07ca8d73b6b414b63123516a3f0b5ec8b68aa81c87e8da252c0ba"
|
|
sha256 cellar: :any_skip_relocation, big_sur: "103712ff11b6bdb397b50ba5e2507d4ad1a7f37befc964003e4eaf1951ec914e"
|
|
sha256 cellar: :any_skip_relocation, catalina: "56a9f6b9e3068dad1b51d47f33c116aae35c004e66813c004320c2657226412a"
|
|
sha256 cellar: :any_skip_relocation, x86_64_linux: "6c64a45510404e8c5d9253cda6da9fd3f36902c6706b2f521b7d2c4a4d7ed201"
|
|
end
|
|
|
|
depends_on "simde"
|
|
depends_on "tbb"
|
|
|
|
def install
|
|
system "make", "install", "PREFIX=#{prefix}"
|
|
pkgshare.install "example", "scripts"
|
|
end
|
|
|
|
test do
|
|
system "#{bin}/bowtie2-build",
|
|
"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
|
|
assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
|
|
"Failed to create viral alignment lambda_virus.1.bt2"
|
|
end
|
|
end
|