42 lines
1.4 KiB
Ruby
42 lines
1.4 KiB
Ruby
class Htslib < Formula
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desc "C library for high-throughput sequencing data formats"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/htslib/releases/download/1.11/htslib-1.11.tar.bz2"
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sha256 "cffadd9baa6fce27b8fe0b01a462b489f06a5433dfe92121f667f40f632538d7"
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license "MIT"
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livecheck do
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url :stable
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strategy :github_latest
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end
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bottle do
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sha256 cellar: :any, arm64_big_sur: "064702cff6bf08fcde27f3315ee3f252d4ab402cec419165bc9c3a29b0ff88f1"
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sha256 cellar: :any, big_sur: "041b57665a510b5f997378bf3e3ce77c514dd3d926bb657b8ed51c5d3d12428d"
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sha256 cellar: :any, catalina: "f28d03e151afa13f70ed32382fe39dfbd519b94684bffc1351e38c928156f678"
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sha256 cellar: :any, mojave: "e32ece4437430fb982ab295b6efaa9bed569dd5a661adcf1bc4240b48ae72914"
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sha256 cellar: :any, high_sierra: "b0fd73dc104edc3fc591a998ce27fe99e8086873b0ac29775532374213225a1f"
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end
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depends_on "xz"
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uses_from_macos "bzip2"
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uses_from_macos "curl"
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uses_from_macos "zlib"
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def install
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system "./configure", "--prefix=#{prefix}", "--enable-libcurl"
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system "make", "install"
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pkgshare.install "test"
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end
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test do
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sam = pkgshare/"test/ce#1.sam"
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assert_match "SAM", shell_output("#{bin}/htsfile #{sam}")
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system "#{bin}/bgzip -c #{sam} > sam.gz"
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assert_predicate testpath/"sam.gz", :exist?
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system "#{bin}/tabix", "-p", "sam", "sam.gz"
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assert_predicate testpath/"sam.gz.tbi", :exist?
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end
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end
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