35 lines
1.2 KiB
Ruby
35 lines
1.2 KiB
Ruby
class Sickle < Formula
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desc "Windowed adaptive trimming for FASTQ files using quality"
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homepage "https://github.com/najoshi/sickle"
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url "https://github.com/najoshi/sickle/archive/v1.33.tar.gz"
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sha256 "eab271d25dc799e2ce67c25626128f8f8ed65e3cd68e799479bba20964624734"
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license "MIT"
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bottle do
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cellar :any_skip_relocation
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sha256 "f33fa7f23d66b928b117a8c3ccfd54a30dc5a798ed6444350be47ced2bebc49e" => :catalina
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sha256 "dc6b4eea0f8da0b1611e12197157c9985c931567d466e3a47f89250a8180b879" => :mojave
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sha256 "3aeaaa4393148876cc55cc9defbe82ae0fe0dabea18e418413b2aa8cff23dd0b" => :high_sierra
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sha256 "844b063d1496d2a7c7f8a12b2239ae32766a538557d44f712c584a30b9775fae" => :sierra
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sha256 "138b38a20aefc55ec4005ee4c4622ec332cbb13ff4ebc39ff45d91a2c12afde8" => :el_capitan
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end
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uses_from_macos "zlib"
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def install
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system "make"
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bin.install "sickle"
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end
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test do
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(testpath/"test.fastq").write <<~EOS
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@U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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+
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IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII0000000000
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EOS
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cmd = "#{bin}/sickle se -f test.fastq -t sanger -o /dev/stdout"
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assert_equal "GTGTC\n", shell_output(cmd).lines[1][-6..]
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end
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end
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