50 lines
1.5 KiB
Ruby
50 lines
1.5 KiB
Ruby
class RaxmlNg < Formula
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desc "RAxML Next Generation: faster, easier-to-use and more flexible"
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homepage "https://sco.h-its.org/exelixis/web/software/raxml/"
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url "https://github.com/amkozlov/raxml-ng.git",
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tag: "1.0.0",
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revision: "308ff5cc88d0785fce1308d5953d7b6a644e8cf8"
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license "AGPL-3.0-or-later"
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bottle do
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cellar :any
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sha256 "0902dc74193390a5769d57e566c686a0dfbe0336d44273be76cc38103551b5aa" => :catalina
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sha256 "08286840feb5b0ef4a8f13717df0d62980e10fcf07c102ffd2722433087ed5b9" => :mojave
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sha256 "358ce270c0607ad2985a02ab4a26a0d87439bf134611e0e6ed82251a50bef1d8" => :high_sierra
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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depends_on "cmake" => :build
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depends_on "libtool" => :build
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depends_on "gmp"
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depends_on "open-mpi"
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uses_from_macos "bison" => :build
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uses_from_macos "flex" => :build
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resource "example" do
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url "https://sco.h-its.org/exelixis/resource/download/hands-on/dna.phy"
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sha256 "c2adc42823313831b97af76b3b1503b84573f10d9d0d563be5815cde0effe0c2"
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end
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def install
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args = std_cmake_args + ["-DUSE_GMP=ON"]
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mkdir "build" do
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system "cmake", "..", *args
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system "make", "install"
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end
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mkdir "build_mpi" do
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ENV["CC"] = "mpicc"
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ENV["CXX"] = "mpicxx"
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system "cmake", "..", *args, "-DUSE_MPI=ON", "-DRAXML_BINARY_NAME=raxml-ng-mpi"
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system "make", "install"
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end
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end
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test do
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testpath.install resource("example")
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system "#{bin}/raxml-ng", "--msa", "dna.phy", "--start", "--model", "GTR"
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end
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end
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