32 lines
1.3 KiB
Ruby
32 lines
1.3 KiB
Ruby
class Bowtie2 < Formula
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desc "Fast and sensitive gapped read aligner"
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homepage "https://bowtie-bio.sourceforge.io/bowtie2/"
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url "https://github.com/BenLangmead/bowtie2/archive/v2.4.4.tar.gz"
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sha256 "ef8272fc1b3e18a30f16cb4b6a4344bf50e1f82fbd3af93dc8194b58e5856f64"
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license "GPL-3.0-or-later"
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revision 1
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "a32813ba9105f8e70c93ea9b66b290da4107a91fa09e7a0e8ceb9d1413050eab"
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sha256 cellar: :any_skip_relocation, big_sur: "96c8bdffc7e247135089bf5ebc6eb6b4ee1d7bdb82d25a56be5c55680c0a50e9"
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sha256 cellar: :any_skip_relocation, catalina: "39a5b463bedd3beeb0f17e95da9a485bc0c95187663e284ca0b45b1a0e09b846"
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sha256 cellar: :any_skip_relocation, mojave: "0b36d2735b4eff060d2ecf3d4a2c3fe71a88cedec08514a4bf6ec23210faf696"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "09d14a1287dad374d8dfe98889d68a7f87aa6d2045dd0fd53fe7979b5c64f7b2"
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end
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depends_on "simde"
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depends_on "tbb"
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def install
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system "make", "install", "PREFIX=#{prefix}"
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pkgshare.install "example", "scripts"
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end
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test do
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system "#{bin}/bowtie2-build",
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"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
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assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
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"Failed to create viral alignment lambda_virus.1.bt2"
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end
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end
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