homebrew-core/Formula/vcftools.rb

39 lines
1.4 KiB
Ruby

class Vcftools < Formula
desc "Tools for working with VCF files"
homepage "https://vcftools.github.io/"
url "https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz"
sha256 "dbfc774383c106b85043daa2c42568816aa6a7b4e6abc965eeea6c47dde914e3"
license "LGPL-3.0"
bottle do
cellar :any_skip_relocation
sha256 "96424c5e9810127b9f450a88fd314eb94662b35ac88aee4c7efbc8f5420dd989" => :catalina
sha256 "5d52f2eafbf96fcffd2b8f9804c2d0ca9752af4242c27ed5fe15a6f8cb935498" => :mojave
sha256 "2fc4ca7c7c23841a1eed8539910737b5986079be6d22d1ff8375f052266bf478" => :high_sierra
sha256 "32c81874b5d34dee1e36f2dd628cb7eaba8ecef3d612985d7c02c61d6790c5b6" => :sierra
sha256 "866bc9927660b97ae5bc34dc38db397212163ab289b3284db2d8c610b2aff3d4" => :el_capitan
end
depends_on "pkg-config" => :build
depends_on "htslib"
def install
system "./configure", "--disable-dependency-tracking",
"--disable-silent-rules",
"--prefix=#{prefix}",
"--with-pmdir=lib/perl5/site_perl"
system "make", "install"
bin.env_script_all_files(libexec/"bin", PERL5LIB: lib/"perl5/site_perl")
end
test do
(testpath/"test.vcf").write <<~EOS
##fileformat=VCFv4.0
#CHROM POS ID REF ALT QUAL FILTER INFO
1 1 . A C 10 PASS .
EOS
system "#{bin}/vcf-validator", "test.vcf"
end
end