32 lines
1.1 KiB
Ruby
32 lines
1.1 KiB
Ruby
class Bcftools < Formula
|
|
desc "Tools for BCF/VCF files and variant calling from samtools"
|
|
homepage "https://www.htslib.org/"
|
|
url "https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2"
|
|
sha256 "f57301869d0055ce3b8e26d8ad880c0c1989bf25eaec8ea5db99b60e31354e2c"
|
|
license "MIT"
|
|
|
|
bottle do
|
|
sha256 "6d232b149d6f1edc21116002d675d1f62ab0bf73158e67802ecb94091fa1ceaa" => :catalina
|
|
sha256 "deb19fb24a4a943cf577b31b53f6aecf55e195fb62133e6b613d5e657e5dbbe0" => :mojave
|
|
sha256 "af4d6172e2cdd40aaa8c49c6e4e8fde3cb90bf7f04f516bd1d1673e3e1659c73" => :high_sierra
|
|
end
|
|
|
|
depends_on "gsl"
|
|
depends_on "htslib"
|
|
depends_on "xz"
|
|
|
|
def install
|
|
system "./configure", "--prefix=#{prefix}",
|
|
"--with-htslib=#{Formula["htslib"].opt_prefix}",
|
|
"--enable-libgsl"
|
|
system "make", "install"
|
|
pkgshare.install "test/query.vcf"
|
|
end
|
|
|
|
test do
|
|
output = shell_output("#{bin}/bcftools stats #{pkgshare}/query.vcf")
|
|
assert_match "number of SNPs:\t3", output
|
|
assert_match "fixploidy", shell_output("#{bin}/bcftools plugin -l")
|
|
end
|
|
end
|