71 lines
2.6 KiB
Ruby
71 lines
2.6 KiB
Ruby
require 'formula'
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class Bamtools < Formula
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homepage 'https://github.com/pezmaster31/bamtools'
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url 'https://github.com/downloads/pezmaster31/bamtools/bamtools-1.0.2.tar.gz'
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sha1 '70d4a1f8d7da73dd381b609b618ed19b6184366e'
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head 'https://github.com/pezmaster31/bamtools.git'
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depends_on 'cmake' => :build
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# Install libbamtools in /usr/local/lib.
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# Link statically with libbamtools-util and libjsoncpp, since
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# they're not installed by default. Sent upstream:
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# https://github.com/pezmaster31/bamtools/pull/55
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def patches
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DATA
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end
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def install
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mkdir 'default' do
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system "cmake", "..", *std_cmake_args
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system "make install"
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end
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end
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def test
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system "#{bin}/bamtools", "--version"
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end
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end
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__END__
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diff -ur bamtools-1.0.2.orig/src/api/CMakeLists.txt bamtools-1.0.2/src/api/CMakeLists.txt
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--- bamtools-1.0.2.orig/src/api/CMakeLists.txt 2011-09-09 18:59:44.000000000 -0700
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+++ bamtools-1.0.2/src/api/CMakeLists.txt 2012-06-15 10:46:18.000000000 -0700
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@@ -54,8 +54,8 @@
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target_link_libraries( BamTools-static z )
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# set library install destinations
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-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
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-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
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+install( TARGETS BamTools LIBRARY DESTINATION "lib" RUNTIME DESTINATION "bin")
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+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib")
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# export API headers
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include(../ExportHeader.cmake)
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diff -ur bamtools-1.0.2.orig/src/third_party/jsoncpp/CMakeLists.txt bamtools-1.0.2/src/third_party/jsoncpp/CMakeLists.txt
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--- bamtools-1.0.2.orig/src/third_party/jsoncpp/CMakeLists.txt 2012-06-15 10:39:40.000000000 -0700
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+++ bamtools-1.0.2/src/third_party/jsoncpp/CMakeLists.txt 2012-06-15 10:41:49.000000000 -0700
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@@ -10,7 +10,7 @@
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add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
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# create jsoncpp library
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-add_library ( jsoncpp SHARED
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+add_library ( jsoncpp STATIC
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json_reader.cpp
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json_value.cpp
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json_writer.cpp
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diff -ur bamtools-1.0.2.orig/src/utils/CMakeLists.txt bamtools-1.0.2/src/utils/CMakeLists.txt
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--- bamtools-1.0.2.orig/src/utils/CMakeLists.txt 2012-06-15 10:39:40.000000000 -0700
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+++ bamtools-1.0.2/src/utils/CMakeLists.txt 2012-06-15 10:41:34.000000000 -0700
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@@ -13,7 +13,7 @@
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add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
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# create BamTools utils library
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-add_library ( BamTools-utils SHARED
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+add_library ( BamTools-utils STATIC
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bamtools_fasta.cpp
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bamtools_options.cpp
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bamtools_pileup_engine.cpp
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