require 'formula' class Samtools < Formula url 'http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2' homepage 'http://samtools.sourceforge.net/' md5 '71dab132e21c0766f0de84c2371a9157' head 'https://samtools.svn.sourceforge.net/svnroot/samtools/trunk/samtools' def install system "make" system "make razip" cd 'bcftools' do system "make" end bin.install %w{samtools razip bcftools/bcftools bcftools/vcfutils.pl} bin.install %w{misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/seqtk misc/wgsim} bin.install Dir['misc/*.pl'] lib.install 'libbam.a' man1.install %w{samtools.1} (share+'samtools').install %w{examples} (include+'bam').install Dir['*.h'] end end