class Bedops < Formula
  desc "Set and statistical operations on genomic data of arbitrary scale"
  homepage "https://github.com/bedops/bedops"
  url "https://github.com/bedops/bedops/archive/v2.4.39.tar.gz"
  sha256 "f8bae10c6e1ccfb873be13446c67fc3a54658515fb5071663883f788fc0e4912"
  license "GPL-2.0"

  bottle do
    sha256 cellar: :any_skip_relocation, arm64_big_sur: "4841f0a68a87db34e0a64afd1c802d7af622773f1a7d3bf3e13a52dc7d790a3d"
    sha256 cellar: :any_skip_relocation, big_sur:       "c2b678454a352033f226fbc3e08163ab7ede676572b7b96b993189cf35df70ff"
    sha256 cellar: :any_skip_relocation, catalina:      "067fa5b0cf0288e60ec7378b07b622218ff385dfc7cadd19ac6fe92ef087aff3"
    sha256 cellar: :any_skip_relocation, mojave:        "a3e404afc30d1f77ebfd5c713933a36fed137ab2086da3d7a07ff08d2cd36fb6"
    sha256 cellar: :any_skip_relocation, high_sierra:   "d30e93e415036d271dd424feebc451de8de2e6ed195f950ff6682623c2969dab"
  end

  def install
    system "make"
    system "make", "install", "BINDIR=#{bin}"
  end

  test do
    (testpath/"first.bed").write <<~EOS
      chr1\t100\t200
    EOS
    (testpath/"second.bed").write <<~EOS
      chr1\t300\t400
    EOS
    output = shell_output("#{bin}/bedops --complement first.bed second.bed")
    assert_match "chr1\t200\t300", output
  end
end