Paml 4.4c

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2010-01-26 07:55:19 +00:00 · 2010-01-26 07:55:19 +00:00 · d7bba25b04
parent d713c38f69
commit d7bba25b04
1 changed files with 23 additions and 0 deletions
--- a/Formula/paml.rb
+++ b/Formula/paml.rb
@ -0,0 +1,23 @@
+require 'formula'
+
+# Phylogenetic Analysis by Maximum Likelihood
+class Paml <Formula
+  url 'http://abacus.gene.ucl.ac.uk/software/paml4.4c.tar.gz'
+  homepage 'http://abacus.gene.ucl.ac.uk/software/paml.html'
+  md5 '0ab0b722bc28c15b22554ec68576b09f'
+  version '4.4c'
+
+  def install
+    Dir.chdir 'src' do
+      inreplace "Makefile" do |s|
+        s.change_make_var! 'CFLAGS', ENV.cflags
+      end
+      system "make"
+      bin.install %w[baseml basemlg codeml pamp evolver yn00 chi2]
+    end
+
+    (share+'paml').install 'dat'
+    (share+'paml').install Dir['*.ctl']
+    doc.install Dir['doc/*']
+  end
+end