Mafft multiple alignment tool

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
2009-11-10 19:53:27 +00:00 · 2009-11-10 19:53:27 +00:00 · 8e5b4132d7
parent 55140bf070
commit 8e5b4132d7
1 changed files with 20 additions and 0 deletions
--- a/Formula/mafft.rb
+++ b/Formula/mafft.rb
@ -0,0 +1,20 @@
+require 'formula'
+
+class Mafft <Formula
+  url 'http://align.bmr.kyushu-u.ac.jp/mafft/software/mafft-6.717-with-extensions-src.tgz'
+  homepage 'http://mafft.cbrc.jp/alignment/software/index.html'
+  md5 '2fc3acfce3a48f9804e8ca5e22bb984d'
+  version '6.717'
+
+  def install
+    inreplace ["core/Makefile", "extensions/Makefile"] do |s|
+      s.change_make_var! "CC", ENV.cc
+      s.change_make_var! "CFLAGS", ENV.cflags
+      s.change_make_var! "PREFIX", prefix
+      s.change_make_var! "MANDIR", man1
+    end
+
+    system "cd core/; make install"
+    system "cd extensions; make install"
+  end
+end