From 8e259804f2ef23f48c0a2dd8f374ff402c249556 Mon Sep 17 00:00:00 2001
From: Ben Blackburne <bpb@lysozyme.net>
Date: Mon, 29 Mar 2010 16:28:11 +0100
Subject: [PATCH] Add bwa

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
---
 Formula/bwa.rb | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)
 create mode 100644 Formula/bwa.rb

diff --git a/Formula/bwa.rb b/Formula/bwa.rb
new file mode 100644
index 00000000000..7b44b8bdedb
--- /dev/null
+++ b/Formula/bwa.rb
@@ -0,0 +1,17 @@
+require 'formula'
+
+class Bwa <Formula
+  url 'http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.8a.tar.bz2'
+  homepage 'http://bio-bwa.sourceforge.net/'
+  md5 '4f34d6d1156f7259eb5a3c946f7f59db'
+
+  def install
+    inreplace "Makefile" do |s|
+      s.change_make_var! 'CFLAGS', ENV.cflags
+    end
+
+    system "make"
+    bin.install "bwa"
+    man1.install "bwa.1"
+  end
+end