diff --git a/Formula/snakemake.rb b/Formula/snakemake.rb index e1450406cc7..64483d1625e 100644 --- a/Formula/snakemake.rb +++ b/Formula/snakemake.rb @@ -6,6 +6,7 @@ class Snakemake < Formula url "https://files.pythonhosted.org/packages/92/11/db720239549ce18bcef241a4dd3868ad56e8c475a8b457fc3edbb5dc4f20/snakemake-7.19.1.tar.gz" sha256 "390ad5e2d5106e84700b7219c0eddf41d61be2205787d77a815fa91e4d624f33" license "MIT" + revision 1 head "https://github.com/snakemake/snakemake.git", branch: "main" bottle do @@ -20,9 +21,8 @@ class Snakemake < Formula depends_on "cbc" depends_on "docutils" - depends_on "jsonschema" depends_on "python-tabulate" - depends_on "python@3.10" + depends_on "python@3.11" depends_on "pyyaml" resource "appdirs" do @@ -30,6 +30,11 @@ class Snakemake < Formula sha256 "7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41" end + resource "attrs" do + url "https://files.pythonhosted.org/packages/1a/cb/c4ffeb41e7137b23755a45e1bfec9cbb76ecf51874c6f1d113984ecaa32c/attrs-22.1.0.tar.gz" + sha256 "29adc2665447e5191d0e7c568fde78b21f9672d344281d0c6e1ab085429b22b6" + end + resource "certifi" do url "https://files.pythonhosted.org/packages/37/f7/2b1b0ec44fdc30a3d31dfebe52226be9ddc40cd6c0f34ffc8923ba423b69/certifi-2022.12.7.tar.gz" sha256 "35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3" @@ -85,6 +90,11 @@ class Snakemake < Formula sha256 "31351a702a408a9e7595a8fc6150fc3f43bb6bf7e319770cbc0db9df9437e852" end + resource "jsonschema" do + url "https://files.pythonhosted.org/packages/36/3d/ca032d5ac064dff543aa13c984737795ac81abc9fb130cd2fcff17cfabc7/jsonschema-4.17.3.tar.gz" + sha256 "0f864437ab8b6076ba6707453ef8f98a6a0d512a80e93f8abdb676f737ecb60d" + end + resource "jupyter-core" do url "https://files.pythonhosted.org/packages/99/db/4de1aaa121fcfa9db093554d6539a31c6b382480daac3172c6206a19367f/jupyter_core-5.1.0.tar.gz" sha256 "a5ae7c09c55c0b26f692ec69323ba2b62e8d7295354d20f6cd57b749de4a05bf" @@ -120,14 +130,19 @@ class Snakemake < Formula sha256 "e73ee6b32d639c9b8cf4b4aded334ba158be5f8313544e056f796ace0a10ae63" end + resource "pyrsistent" do + url "https://files.pythonhosted.org/packages/b8/ef/325da441a385a8a931b3eeb70db23cb52da42799691988d8d943c5237f10/pyrsistent-0.19.2.tar.gz" + sha256 "bfa0351be89c9fcbcb8c9879b826f4353be10f58f8a677efab0c017bf7137ec2" + end + resource "requests" do url "https://files.pythonhosted.org/packages/a5/61/a867851fd5ab77277495a8709ddda0861b28163c4613b011bc00228cc724/requests-2.28.1.tar.gz" sha256 "7c5599b102feddaa661c826c56ab4fee28bfd17f5abca1ebbe3e7f19d7c97983" end resource "reretry" do - url "https://files.pythonhosted.org/packages/d3/75/4e53865926a372de99299c2fb1f00d508c33e00d9a32e9dacaf8a4001861/reretry-0.11.1.tar.gz" - sha256 "4ae1840ae9e443822bb70543c485bb9c45d1d009e32bd6809f2a9f2839149f5d" + url "https://files.pythonhosted.org/packages/40/1d/25d562a62b7471616bccd7c15a7533062eb383927e68667bf331db990415/reretry-0.11.8.tar.gz" + sha256 "f2791fcebe512ea2f1d153a2874778523a8064860b591cd90afc21a8bed432e3" end resource "smart-open" do @@ -177,11 +192,6 @@ class Snakemake < Formula def install virtualenv_install_with_resources - - # we depend on jsonschema, but that's a separate formula, so install a `.pth` file to link them - site_packages = Language::Python.site_packages("python3.10") - jsonschema = Formula["jsonschema"].opt_libexec - (libexec/site_packages/"homebrew-jsonschema.pth").write jsonschema/site_packages end test do diff --git a/pypi_formula_mappings.json b/pypi_formula_mappings.json index e627a3482de..874b405b0ad 100644 --- a/pypi_formula_mappings.json +++ b/pypi_formula_mappings.json @@ -576,7 +576,7 @@ ] }, "snakemake": { - "exclude_packages": ["tabulate", "PyYAML", "jsonschema", "attrs", "pyrsistent", "docutils"] + "exclude_packages": ["tabulate", "PyYAML", "docutils"] }, "sphinx-doc": { "extra_packages": ["numpydoc"],