Open Babel 2.3.2
Closes Homebrew/homebrew#16508. Signed-off-by: Adam Vandenberg <flangy@gmail.com>master
Agilio Padua
Adam Vandenberg
parent
c18f402812
commit
770cbfe796
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@ -1,94 +1,82 @@
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require 'formula'
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require 'formula'
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class OasaPythonModule < Requirement
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def message; <<-EOS.undent
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The oasa Python module is required for some operations.
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It can be downloaded from:
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http://bkchem.zirael.org/oasa_en.html
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EOS
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end
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def satisfied?
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args = %W{/usr/bin/env python -c import\ oasa}
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quiet_system *args
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end
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end
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class OpenBabel < Formula
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class OpenBabel < Formula
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homepage 'http://openbabel.org/'
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homepage 'http://www.openbabel.org'
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url 'http://sourceforge.net/projects/openbabel/files/openbabel/2.2.3/openbabel-2.2.3.tar.gz'
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url 'http://sourceforge.net/projects/openbabel/files/openbabel/2.3.2/openbabel-2.3.2.tar.gz'
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sha1 'e396b27551a106e001ca6c953181657a0a53f43f'
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sha1 'b8831a308617d1c78a790479523e43524f07d50d'
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head 'https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk'
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option 'gui', 'Build the Graphical User Interface'
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option 'png', 'Support PNG depiction'
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option 'python', 'Compile Python language bindings'
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option 'java', 'Compile Java language bindings'
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depends_on OasaPythonModule.new
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depends_on 'cmake' => :build
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depends_on 'wxmac' if build.include? 'gui'
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def options
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depends_on 'cairo' if build.include? 'png'
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[
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depends_on 'eigen' if build.include? 'python'
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["--perl", "Perl bindings"],
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depends_on 'eigen' if build.include? 'java'
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["--python", "Python bindings"],
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["--ruby", "Ruby bindings"]
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]
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end
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def install
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def install
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args = ["--disable-dependency-tracking",
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args = %W[ -DCMAKE_INSTALL_PREFIX=#{prefix} ]
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"--prefix=#{prefix}"]
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args << "-DPYTHON_BINDINGS=ON" if build.include? 'python'
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args << '--enable-maintainer-mode' if ARGV.build_head?
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args << "-DJAVA_BINDINGS=ON" if build.include? 'java'
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args << "-DBUILD_GUI=ON" if build.include? 'gui'
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args << "-DCAIRO_INCLUDE_DIRS=#{include}/cairo "\
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"-DCAIRO_LIBRARIES=#{lib}/libcairo.dylib" if build.include? 'png'
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system "./configure", *args
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# Find the right pyhton installation (code from opencv.rb)
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system "make"
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if build.include? 'python'
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system "make install"
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python_prefix = `python-config --prefix`.strip
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# Python is actually a library. The libpythonX.Y.dylib points to this lib, too.
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ENV['OPENBABEL_INSTALL'] = prefix
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if File.exist? "#{python_prefix}/Python"
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# Python was compiled with --framework:
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# Install the python bindings
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args << "-DPYTHON_LIBRARY='#{python_prefix}/Python'"
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if ARGV.include? '--python'
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if !MacOS::CLT.installed? and python_prefix.start_with? '/System/Library'
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cd 'scripts/python' do
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# For Xcode-only systems, the headers of system's python are inside of Xcode
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system "python", "setup.py", "build"
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args << "-DPYTHON_INCLUDE_DIR='#{MacOS.sdk_path}/System/Library/Frameworks/Python.framework/Versions/2.7/Headers'"
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system "python", "setup.py", "install", "--prefix=#{prefix}"
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else
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end
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args << "-DPYTHON_INCLUDE_DIR='#{python_prefix}/Headers'"
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end
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# Install the perl bindings.
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if ARGV.include? '--perl'
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cd 'scripts/perl' do
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# because it's not yet been linked, the perl script won't find the newly
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# compiled library unless we pass it in as LD_LIBRARY_PATH.
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ENV['LD_LIBRARY_PATH'] = "lib"
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system 'perl', 'Makefile.PL'
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# With the additional argument "PREFIX=#{prefix}" it puts things in #{prefix} (where perl can't find them).
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# Without, it puts them in /Library/Perl/...
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inreplace "Makefile" do |s|
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# Fix the broken Makefile (-bundle not allowed with -dynamiclib).
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# I think this is a SWIG error, but I'm not sure.
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s.gsub! '-bundle ', ''
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# Don't waste time building PPC version.
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s.gsub! '-arch ppc ', ''
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# Don't build i386 version when libopenbabel can't link to it.
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s.gsub! '-arch i386 ', ''
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end
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end
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system "make"
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else
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system "make test"
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python_lib = "#{python_prefix}/lib/lib#{which_python}"
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system "make install"
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if File.exists? "#{python_lib}.a"
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args << "-DPYTHON_LIBRARY='#{python_lib}.a'"
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else
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args << "-DPYTHON_LIBRARY='#{python_lib}.dylib'"
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end
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args << "-DPYTHON_INCLUDE_DIR='#{python_prefix}/include/#{which_python}'"
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end
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end
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args << "-DPYTHON_PACKAGES_PATH='#{lib}/#{which_python}/site-packages'"
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end
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end
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# Install the ruby bindings.
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args << '..'
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if ARGV.include? '--ruby'
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cd 'scripts/ruby' do
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system "ruby", "extconf.rb",
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"--with-openbabel-include=#{include}",
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"--with-openbabel-lib=#{lib}"
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# Don't build i386 version when libopenbabel can't link to it.
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mkdir 'build' do
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inreplace "Makefile", '-arch i386 ', ''
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system "cmake", *args
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system "make"
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system "make install"
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end
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# With the following line it puts things in #{prefix} (where ruby can't find them).
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if build.include? 'python'
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# Without, it puts them in /Library/Ruby/...
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pydir = lib/which_python/'site-packages'
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#ENV['DESTDIR']=prefix
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pydir.install lib/'openbabel.py', lib/'pybel.py'
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system "make"
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cd pydir do
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system "make install"
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`python -c 'import py_compile;py_compile.compile(\"openbabel.py\");py_compile.compile(\"pybel.py\")'`
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end
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end
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end
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end
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end
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end
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def caveats; <<-EOS.undent
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Python modules are installed to #{HOMEBREW_PREFIX}/lib/#{which_python}/site-packages
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so the PYTHONPATH environment variable should include the paths
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#{HOMEBREW_PREFIX}/lib/#{which_python}/site-packages:#{HOMEBREW_PREFIX}/lib
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Java libraries are installed to #{HOMEBREW_PREFIX}/lib so this path should be
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included in the CLASSPATH environment variable.
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EOS
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end
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def which_python
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"python" + `python -c 'import sys;print(sys.version[:3])'`.strip
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end
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end
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end
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