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diamond: import from homebrew/science 

Closes #22014.

Signed-off-by: ilovezfs <ilovezfs@icloud.com>
master
tmozgach 2017-12-21 16:36:39 -08:00 committed by ilovezfs
parent 859618e438
commit 3f421d70e4
1 changed files with 38 additions and 0 deletions
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Formula/diamond.rb Normal file
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class Diamond < Formula
desc "Accelerated BLAST compatible local sequence aligner"
homepage "https://ab.inf.uni-tuebingen.de/software/diamond/"
url "https://github.com/bbuchfink/diamond/archive/v0.9.13.tar.gz"
sha256 "066d2744ef9e8f3d6f7eba5e6eb226434299b18574c8716bbdd8faca31b325de"
depends_on "cmake" => :build
def install
system "cmake", ".", *std_cmake_args
system "make", "install"
end
test do
(testpath/"nr.faa").write <<~EOS
>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
eagewrepgrrslqXaeiaplhsslgdrarlrlkk
>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
rqengvnpgggacseprsrhctpawaterdsvskk
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
gftvlarmvsisXprdppasasqsagitgvshrar
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
vspcXpgwsrspdlvirpprppkvlglqaXatapg
EOS
output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr")
assert_match "Processed 6 sequences, 572 letters.", output
end
end