44 lines
1.6 KiB
Ruby
44 lines
1.6 KiB
Ruby
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class Blast < Formula
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desc "Basic Local Alignment Search Tool"
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homepage "https://blast.ncbi.nlm.nih.gov/"
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url "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-src.tar.gz"
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mirror "ftp://ftp.hgc.jp/pub/mirror/ncbi/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-src.tar.gz"
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version "2.6.0"
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sha256 "0510e1d607d0fb4389eca50d434d5a0be787423b6850b3a4f315abc2ef19c996"
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revision 3
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depends_on "python" if MacOS.version <= :snow_leopard
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# Remove for > 2.6
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patch do
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url "https://raw.githubusercontent.com/Homebrew/formula-patches/5fa7fda60c17a2a31e402522d0f7e5584d3b946b/blast/blast-make-fix2.5.0.diff"
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sha256 "ab6b827073df48a110e47b8de4bf137fd73f3bf1d14c242a706e89b9c4f453ae"
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end
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def install
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cd "c++" do
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# Use ./configure --without-boost to fix
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# error: allocating an object of abstract class type 'ncbi::CNcbiBoostLogger'
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# Boost is used only for unit tests.
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# See https://github.com/Homebrew/homebrew-science/pull/3537#issuecomment-220136266
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system "./configure", "--prefix=#{prefix}",
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"--without-debug",
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"--without-boost"
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# Fix the error: install: ReleaseMT/lib/*.*: No such file or directory
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system "make"
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system "make", "install"
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end
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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output = shell_output("#{bin}/blastn -query test.fasta -subject test.fasta")
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assert_match "Identities = 70/70", output
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end
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end
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